SARS-CoV-2: taxonomia, origem e constituição
DOI:
https://doi.org/10.11606/issn.1679-9836.v99i5p473-479Palavras-chave:
SARS-CoV-2, Coronavírus, Classificação, Estrutura viral, OrigemResumo
Introdução: O SARS-CoV-2 é um novo coronavírus, responsável pela atual pandemia de COVID-19, o qual já infectou e causou a morte de milhares de pessoas em todo o mundo. Objetivo: Descrever aspectos básicos e fundamentais sobre o SARS-CoV-2, como nome, constituição, possíveis origens e classificação. Método: Revisão bibliográfica exploratória e descritiva, elaborada por meio de pesquisas nas plataformas PubMed, Scopus, Google Acadêmico, e SciELO. Os termos utilizados para a seleção dos materiais foram: “SARS-CoV-2”, “COVID-19”, “spike-protein”, “classification”, “coronavirus” e suas combinações. Resultados: Os coronavírus pertencem à família Coronaviridae, a qual abrange 2 subfamílias, 5 gêneros, 26 subgêneros e 46 espécies de vírus. O SARS-CoV-2 pertence ao gênero Betacoronavirus, subgênero Sarbecovirus, espécie Severe acute respiratory syndrome-related coronavirus, e está relacionado à síndrome respiratória aguda. Sua classificação foi realizada pelo International Committee on Taxonomy of Viruses (ICTV) levando-se em consideração principalmente características moleculares e filogenéticas e não a doença que causa. Este vírus surgiu na China, país em que há o hábito de consumir animais domésticos ou selvagens recentemente abatidos. Especula-se que o morcego-ferradura (Rhinolophus sinicus) seja o seu hospedeiro primário e que o pangolim malaio (Manis javanica) o hospedeiro intermediário. O SARS-CoV-2 é um vírus envelopado, aproximadamente esférico, e os seus vírions têm diâmetros médios de 80 a 120 nm. Possui genoma de RNA não segmentado, fita simples, codificando quatro proteínas principais: glicoproteína espicular (S), proteína do envelope (E), glicoproteína da membrana (M) e proteína do nucleocapsídeo (N). Os coronavírus utilizam a S como principal alvo para neutralizar anticorpos e para se ligar ao receptor enzima conversora de angiotensina 2. Conclusão: O conhecimento aprofundado sobre as características básicas do SARS-CoV-2 é fundamental para a melhor compreensão e entendimento dos aspectos epidemiológicos, clínicos, fisiopatológicos e para o tratamento da COVID-19.
Downloads
Referências
Enquist LW. Virology in the 21st century. J Virol. 2009;83(11):5296-308. doi: https://doi.org/10.1128/JVI.00151-09.
Santos NSO. Novos desafios no ensino da virologia. Rev Pan-Amaz Saude. 2018;9(1):7-8. doi: https://doi.org/10.5123/S2176-62232018000100001.
Chomel BB. Zoonoses. Ref Mod Biomed Sci. 2014. doi: https://doi.org/10.1016/B978-0-12-801238-3.02426-0.
Foster JE. Viruses as pathogens: animal viruses affecting wild and domesticated species. In: Tennant P, Fermin G, Foster J, editors. Viruses. Molecular biology, host interactions, and applications to biotechnology. London: Academic Press; 2018. Chap. 8, p.189-216. doi: https://doi.org/10.1016/B978-0-12-811257-1.00008-5.
Leduc JW, Barry MA. SARS, the first pandemic of the 21st century. Emerging Infect Dis. 2004;10(11):e26. doi: https://doi.org/10.3201/eid1011.040797_02.
World Health Organization (WHO). Coronavirus disease 2019 (COVID-19) Situation Report – 51. Data as reported by national authorities by 10 AM CET 11 March 2020. Available from: https://www.who.int/docs/default-source/coronaviruse/situation-reports/20200311-sitrep-51-covid-19.pdf?sfvrsn=1ba62e57_10.
World Health Organization (WHO). Coronavirus disease 2019 (COVID-19) Situation Report – 82. Data as received by WHO from national authorities by 10:00 CET, 11 April 2020. Available from: https://www.who.int/docs/default-source/coronaviruse/situation-reports/20200411-sitrep-82-covid-19.pdf?sfvrsn=74a5d15_2.
Gates B. Responding to Covid-19 - a once-in-a-century pandemic? N Engl J Med. 2020;382:1677-9. doi: https://doi.org/10.1056/NEJMp2003762.
Huang C, Wang Y, Li X, Ren L, Zhao J, Hu Y, Zhang L, Fan G, Xu J, Gu X, Cheng Z, Yu T, Xia J, Wei Y, Wu W, Xie X, Yin W, Li H, Liu M, Xiao Y, Gao H, Guo L, Xie J, Wang G, Jiang R, Gao Z, Jin Q, Wang J, Cao B. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. Lancet. 2020;395:497-506. doi: https://doi.org/10.1016/ S0140-6736(20)30183-5.
Fan Y, Zhao K, Shi Z-L, Zhou P. Bat coronaviruses in china. Viruses. 2019;11(210):14. doi: https://doi.org/10.3390/v11030210.
Cheng VCC, Lau SKP, Woo PCY, Yuen KY. Severe acute respiratory syndrome coronavirus as an agent of emerging and reemerging infection. Clin Microbiol Rev. 2007;20(4):660-94. doi: https://doi.org/10.1128/CMR.00023-07.
Confalonieri UEC. Emergência de doenças infecciosas humanas: processos ecológicos e abordagens preditivas. Oecol Aust. 2010;14(3):591-602. doi: https://doi.org/10.4257/oeco.2010.1403.01.
Kasmi Y, Khataby K, Souiri A, Ennaji MM. Coronaviridae: 100,000 years of emergence and reemergence. In: Ennaji MM, editor. Emerging and reemerging viral pathogens. Vol. I. Fundamental and Basic Virology Aspects of Human, Animal and Plant Pathogens. London: Elsevier Academic Press; 2020. v.1, p.127-49. doi: https://doi.org/10.1016/B978-0-12-819400-3.00007-7.
Wu A, Peng Y, Huang B, Ding X, Wang X, Niu P, Meng J, Zhu Z, Zhang Z, Wang J, Sheng J, Quan L, Xia Z, Tan W, Cheng G, Jiang T. Genome composition and divergence of the novel coronavirus (2019-nCoV) originating in china. Cell Host Microbe. 2020;27(311):325-8. doi: https://doi.org/10.1016/j.chom.2020.02.001.
Decaro N, Lorusso A. Novel human coronavirus (SARS-CoV-2): a lesson from animal coronaviruses. Vet Microbiol. 2020;244:108693. doi: https://doi.org/10.1016/j.vetmic.2020.108693.
Cui J, Li F, Shi Z-L. Origin and evolution of pathogenic coronaviruses. Nat Rev Microbiol. 2019;17(3):181-192. doi: https://doi.org/10.1038/s41579-018-0118-9.
Chan JF-W, Kok K-H, Zhu Z, Chu H, Kai-Wang K, To KK-W, Yuan S, Yuen K-Y. Genomic characterization of the 2019 novel human pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan. Emerg Microbes Infect. 2020;9(1):221-36. doi: https://doi.org/10.1080/22221751.2020.1719902.
Han G-Z. Pangolins harbor SARS-CoV-2-related coronaviruses. Trends Microbiol. 2020;28(7):515-7. doi: https://doi.org/10.1016/j.tim.2020.04.001.
Zhang T, Wu Q, Zhang Z. Probable pangolin origin of SARS-CoV-2 associated with the COVID-19 outbreak. Curr Biol. 2020;30(76):1346-51.e2. doi: https://doi.org/10.1016/j.cub.2020.03.022.
Zhou P, Yang XL, Wang X-G, Hu B, Zhang L, Zhang W, Si H-R, Zhu Y, LI B, Huang C-L, Chen H-D, Chen J, Luo Y, Guo H, Jiang R-D, Liu M-Q, Chen Y, Shen X-R, Wang X, Zheng X-S, Zhao K, Chen Q-J, Deng F, Liu L-L, Yan B, Zhan F-X, Wang Y-Y, Xiao G-F, Shi Z-L. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. 2020;579:270-86. doi: https://doi.org/10.1038/s41586-020-2012-7.
Organização Pan-Americana de Saúde (OPS). COVID-19 (doença causada pelo novo coronavírus). Folha Informativa, 2020. Atual. 17 abr. 2020. Disponível em: https://www.paho.org/bra/index.php?option=com_content&view=article&id=6101:covid19&Itemid=875.
Wang L-F, Anderson DE, Mackenzie JS, Merson MH. From Hendra to Wuhan: what has been learned in responding to emerging zoonotic viroses. Lancet. 2020;395(1022422–28):e33-e34. doi: https://doi.org/10.1016/S0140-6736(20)30350-0.
Gorbalenya AE, Baker SC, Baric RS, De Groot RJ, Drosten C, Gulyaeva AA, Haagmans BL, Lauber C, Leontovich AM, Neuman BW, Penzar D, Perlman S, Poon LLM, Samborskiy DV, Sidorov IA, Sola I, Ziebuhr J. The species severe acute respiratory syndrome related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2. Coronaviridae Study Group of the International Committee on Taxonomy of Viruses. Nat Microbiol. 2020;5(536):536-44. doi: https://doi.org/10.1038/s41564-020-0695-z.
Jiang S, Shi Z, Shu Y, Song J, Gao GF, Tan W, Guo D. A distinct name is needed for the new coronavirus. Lancet. 2020;395(1022821-27):949. doi: https://doi.org/10.1016/S0140-6736(20)30419-0.
Jiang S, Hillyer C, Du L. Neutralizing antibodies against SARS-CoV-2 and other human coronaviruses. Trends Immunol. 2020;41(5):355-359. doi: https://doi.org/10.1016/j.it.2020.03.007.
World Health Organization (WHO). Naming the coronavirus disease (COVID-19) and the virus that causes it. Geneve; 2020 [cited 2020 April 12]. Available from: https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/naming-the-coronavirus-disease-(covid-2019)-and-the-virus-that-causes-it.
World Health Organization (WHO). Novel coronavirus (2019-nCoV) situation report – 22. Geneve; 2020. Available from: https://www.who.int/docs/default-source/coronaviruse/situation-reports/20200211-sitrep-22-ncov.pdf.
Calisher CH. Qual é a diferença entre uma espécie de vírus e um vírus? A mesma diferença existente entre Homo sapiens e você. Rev Pan-Amaz Saude. 2010;1(3):137-9. doi: https://doi.org/10.5123/S2176-62232010000300019.
International Committee on Taxonomy of Viruses (ICTV). Virus taxonomy: 2018b release. EC 50, Washington, DC; July 2018. Email ratification February 2019 (MSL #34). Available from: https://talk.ictvonline.org/taxonomy/.
Ko W-C, Rolain J-M, Lee N-Y, Chen P-L, Huang CT, Lee P-I, Hsueh P-R. Arguments in favour of remdesivir for treating SARS-CoV-2 infections. Int J Antimicrob Agents. 2020;55(4):article 105933. doi: https://doi.org/10.1016/j.ijantimicag.2020.105933.
Woo PC, Lau SKP, Lam CSF, Lau Ccy, Tsang AKL, Lau JHN, Bai R, Teng JLL, Tsang CCC, Wang M, Zheng, B-J, Chan K-H, Yuena K-Y. Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus. J Virol. 2012;86(7):3995-4008. doi: https://doi.org/10.1128/JVI.06540-11.
Jaimes JA, André NM, Chappie JS, Millet JK, Whittaker GR. Phylogenetic analysis and structural modeling of SARS-CoV-2 spike protein reveals an evolutionary distinct and proteolytically sensitive activation loop. J Mol Biol. 2020;432(10):3309-25. doi: https://doi.org/10.1016/j.jmb.2020.04.009.
Masters PS. The molecular biology of coronaviruses. Adv Virus Res. 2006;66:193-292. doi: https://doi.org/10.1016/S0065-3527(06)66005-3.
Fung S, Liu DX. Human coronavirus: host-pathogen interaction. Annu Rev Microbiol. 2019;73:529-57. doi: https://doi.org/10.1146/annurev-micro-020518-115759.
Ou X, Liu Y, Lei X, Li P, Mi D, Ren L, Guo L, Guo R, Chen T, Hu J, Xiang Z, Mu Z, Chen X, Chen J, Hu K, Jin Q, Wang J, Qian Z. Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV. Nat Commun. 2020;11(1620):1-12. doi: https://doi.org/10.1038/s41467-020-15562-9.
Luan J, Lu Y, Jin X, Zhang L. Spike protein recognition of mammalian ACE2 predicts the host range and an optimized ACE2 for SARS-CoV-2 infection. Biochem Biophys Res Commun. 2020;526(121):165-9. doi: https://doi.org/10.1016/j.bbrc.2020.03.047.
Fuzimoto AD, Isidoro C. The antiviral and coronavirus-host protein pathways inhibiting properties of herbs and natural compounds – Additional weapons in the fight against the COVID-19 pandemic? J Tradit Complement Med. 2020;10(40):405-19. doi: https://doi.org/10.1016/j.jtcme.2020.05.003.
Koirala, A, Joo JY, Khatami A, Chiu C, Britton, PN. Vaccines for COVID-19: the current state of play. Paediatr Respir Rev. 2020;35:43-9. doi: https://doi.org/101016/j.prrv.2020.06.010.
Vellingiri B, Jayaramayya K, Iyer M, Narayanasamy A, Govindasamy V, Giridharan B, Ganesan S, Venugopal A, Venkatesan D, Ganesan H, Rajagopalan K, Rahman PKSM, CHO S-G, Kumar NS, Subramaniamk MD. COVID-19: a promising cure for the global panic. Sci Total Environ. 2020;725:138227. doi: https://doi.org/10.1016/j.scitotenv.2020.138277.
Downloads
Publicado
Edição
Seção
Licença
Copyright (c) 2020 Omar Arafat Kdudsi Khalil, Sara da Silva Khalil
Este trabalho está licenciado sob uma licença Creative Commons Attribution-ShareAlike 4.0 International License.